PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA010671-PA
Common NameOsI_11708
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family HSF
Protein Properties Length: 289aa    MW: 32360.1 Da    PI: 6.5117
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA010671-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.51.4e-35211132103
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sw e++ +fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg k+ll
  BGIOSGA010671-PA  21 FLSKTYQLVDDPSTDDVVSWGEDEATFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLL 104
                       9****************************************************************999.........**************** PP

                       XXXXXXXXX CS
      HSF_DNA-bind  95 ekikrkkse 103
                       ++i+r+ks+
  BGIOSGA010671-PA 105 SEIHRRKSS 113
                       ******987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.5E-5817110IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.36E-3318110IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.9E-3718110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000564.1E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MVVSMERSHG RSTTTAAPAP FLSKTYQLVD DPSTDDVVSW GEDEATFVVW RPPEFARDLL  60
PNYFKHNNFS SFVRQLNTYG FRKIVADRWE FANEFFRKGA KHLLSEIHRR KSSSCSQPQP  120
PPPFPMHQHY PLSLFSPPTT PRSPPVGAAA AAAYHFQEEY CSSPADYAGG GGDLLAALSE  180
DNRQLRRRNS LLLSELAHMR KLYNDIIYFL QNHVEPVAPP LLAAATSCRL VELGPSTTER  240
RRCAASPSGD NDDDAAVRLF GVRLDDDHGK KRRVQLVQED EGDEQGSEG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8l_H1e-21211145109Heat shock factor protein 2
5d8l_F1e-21211145109Heat shock factor protein 2
5d8l_D1e-21211145109Heat shock factor protein 2
5d8l_B1e-21211145109Heat shock factor protein 2
5d8k_B1e-21211145109Heat shock factor protein 2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.688441e-165panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1257840.0AC125784.1 Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0012F18, from chromosome 3, complete sequence.
GenBankAP0149590.0AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126110.0CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015627976.11e-174PREDICTED: heat stress transcription factor B-4d
SwissprotQ10KX81e-176HFB4D_ORYSJ; Heat stress transcription factor B-4d
TrEMBLB8AQ690.0B8AQ69_ORYSI; Putative uncharacterized protein
STRINGBGIOSGA010671-PA0.0(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-70heat shock transcription factor B4